I am working on PharmGKB data. Which is on dbSNP version 147 while my vcfs are on dbSNP 150 version.
I am searching PharmGKB rsids in my file. But I think due to different version of dbSNP some rsids are not found.
I want to convert PharmGKB rsids from 147 to 150. But their are no coordinates of genome available in PharmGKB. If I searched coordinates and then use these coordinates to update rsids then this will be long process. I searched and found dbSNP batch query on internet. But on its site it is announced that it will be retired in June 2018.
Can any one please tell me how should I update rsids without finding its coordinates?