NGSadmix not generating .qopt file
I am trying to run NGSadmix on a cluster through a SLURM script. Everything looks okay with the beagle file, but the output just gives me the .filter and .log files and I don't get the .qopt file. Also, the .log file looks incomplete in the sense that I don't have the log-likelihood value and a few other lines.
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nadidixit •
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What is the command you are using? Did you check SLURM stdout and stderr files? It seems your run may be getting interrupted before finishing.