NGSadmix segmentation 11 error message
0
0
Entering edit mode
4.9 years ago
dazarate • 0

Hello, I'm running into a problem running NGSadmix. I have a beagle genotype likelihood file of 104 individuals. I submit this

./NGSadmix -likes file.beagle.gz -K 4 -P 4 -o output -minMaf 0.08 -minInd 60

I receive an error:

-> Dumping file: peachK4.log
-> Dumping file: peachK4.filter
-> Input: lname=masterbee_snps.beagle.gz nPop=4, fname=(null) qname=(null) outfiles=peachK4
-> Setup: seed=1559236220 nThreads=4 method=1
-> Convergence: maxIter=2000 tol=0.000010 tolLike50=0.100000 dymBound=0
-> Filters: misTol=0.050000 minMaf=0.080000 minLrt=0.000000 minInd=60
-> Segmentation fault: 11

I have successfully run NGSadmix before with another smaller version of this file with no problem. I'm not sure what's going on! Does anyone have an idea?

ngs ngsadmix • 1.3k views
ADD COMMENT
0
Entering edit mode

The system is running out of memory.

ADD REPLY

Login before adding your answer.

Traffic: 1830 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6