TCGA purity data
Hi
I know that Cosmics offers a file with the purity for each tumor sample but no BAF or LogR, but I'm interested in running ascat on some TCGA samples to obtain Germline/Tumor BAF and LogR for a downstream analysis.
Do you know if there is any database with this information available? I've not found anything and i would like to be sure of this before running it by my own.
Thanks
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ASCAT was developed by some colleagues of mine. Just to clarify: ASCAT accepts, as input, LogR and BAF for Tumour alone or Tumour+Normal. From these, it calculates tumour purity and ploidy.