Germline mutation list in Lung TCGA data
Hello,
I'm looking for a list of germline mutations & their corresponding TCGA IDs for lung cancer. I know that to access germline calls one has to obtain special credentials - yet I'm not interested in the sequences, just in a list of mutations (in the normal tissue) & their corresponding TCGA sample IDs.
There are several papers that analyzed the germline mutations data, but I could not find such list so far. Any leads would be greatly appreciated.
Thanks!
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TCGA doesn't provide germline variants for privacy reasons. I think you will have to download BAM files and look by yourself.
Thanks, my thinking is that someone must have already done (& published) this data in the form of a Database or MS