how to analyze synteny between 4 genomes. please suggest suitable tool
i want to analyze synteny of 4 genomes .therefore it is my humble request to kindly suggest any suitable tool
• 6,019 views
•
link
updated
by
Kevin Blighe
•
written
by
kaurjaimeet911 •
•
written
by
kaurjaimeet911 •
4 answers
• 1 views
•
link
written
by
jean.elbers
i-ADHoRe is another option, rather for analyzing (or looking for synteny) then visualising though (can't make up from your question what the exact goal is?)
• 1 views
•
link
written
by
lieven.sterck
You may find utility in these:
- Synteny Portal: a web-based application portal for synteny block analysis
- mySyntenyPortal: an application package to construct websites for synteny block analysis (just published)
- Genomicus (recommended by a colleague)
Kevin
• 1 views
•
link
written
by
Kevin Blighe
Log in to answer this question.
More posts like this
-
Tool for phylogenetic tree creation of Genome
written by microorganism_001 •
-
synteny viewer
written by shwetamgr1 •
-
Convert pileup file to genetic map file
written by taniamahmood38 •
-
Motif identification in ripseq analysis
written by bioinfo_ga •
-
How to download multiple sequences from NCBI-Protein or Uniprot databases?
written by Kumar
-
Is there a tool for making a synteny blocks of a gene with its downstream and upstream genes using …
written by sharmatina189059 •
-
Tool to process VCF file
written by shuksi1984 •
-
Calculate the Quality of Bases
written by manojkumarbioinfo
-
MAF multiple alignment file viewer
written by any •
-
Analysis of the impact of large genomic rearrangements (deletions of some exons) on gene expression…
written by mania.abbas •
Synmap is a good tool but works only up to 3 genomes (https://genomevolution.org/coge/SynMap3D.pl)
+1 for Synima, I have recently used to for multiple Plasmodium genomes and it worked like a charm!