error running RSEM in Galaxy
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5.9 years ago
kml ▴ 30

Hi all, I'm trying to run RSEM using Galaxy, but keep getting error messages: "cannot find 'bowtie_options' while searching for 'input.bowtie_options.fullparams'". I'm inputting BAM files from output of HISAT2 alignment. could that be the problem? I run before that "RSEM prepare reference", with a genome and a gtf file. does anyone know what is the problem? thank you in advance.
RNA-Seq RSEM quantification • 1.5k views
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Please report this on the galaxy site and also mention the Galaxy server you happen to be using.

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I'm using the Galaxy Melbourne server. Thanks

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