Large data set visualisation
I have orthologous gene output from OrthAgogue. I want to compare between genera, between clades and within clades. Between clades and between genera can be accomplished using Venn diagrams without too much fuss (I have 2 genera, one with 2 clades, one with 4, a maximum of 17 strains per clade).
I want to find out how to visualise the interactions within clades groups. I've read about UpSet but I'm having a hard time deciding whether it would be appropriate or not, given that all together I have 12512 gene clusters.
Any suggestions would be greatly appreciated!
• 1,238 views
•
link
written
by
s.pidcock94 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Approach for multi species comparative transcriptomics and differential expression analyses
written by fish_enthusiast •
-
How to make venn diagram for differentially expressed data
written by rishav513 •
-
Statistical test to decide key clusters
written by beckyrjb6 •
-
Comparing Two Different Groups
written by joe_genome •
-
Difference between "Original tree" and "Bootstrap consensus tree" in Mega X software for phylogeny
written by lessismore
-
Alternatives to Venn Diagrams
written by jsneaththompson
-
Choosing specific candidate genes for phylogenetic tree construction
written by Penny Liu •
-
Finding Overlapping Regions of Chip-Seq peaks, then visualising it.
written by morovatunc
-
Normalization of gene expression using FPKM values
written by mrkumarbiotech •
-
How To Efficiently Remove Snps That Are Present In All Samples?
written by Ian
Can you give a sample of the data that you've got? What about CIRCOS? - here's a simple example showing immunoglobulin region combinations