question for the result of lncRNA microarray
Hello Recently i got the result of lncRNA microarray data from Arraystar which has novel or annotated lncRNAs from Arraystar therefore i'd like to know how to get sequence via UCSC. im already done few lncRNAs which is detected by GENCODE or Refseq, but the problem is RNAseq one. The results didnt show the lncRNA's sequence or exon number. So i tried genepred format however it didnt worked. May I know the format of these kinds of lncRNA? or please notice any other solution for this....
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If you have the co-ordinates of the lncRNAs, then obtain the sequence directly from the UCSC. Take a look here: How To Get The Sequence Of A Genomic Region From Ucsc?