Hi everyone,

I have 100 samples of Lung Cancer data. I did the alignment to hg38 genome and used gencode hg38 gtf for annotation. I used tools like CPC, CPAT for calculating coding potential of lncRNAs which have length > 200bp. So, with this steps I found some thousands of lncRNAs which are not annotated. And these would canonical novel lncRNAs.

Now, I want to check whether these novel lncRNAs are present in mitranscriptome. I would like to know on what basis I can overlap the novel lncRNAs on mitranscriptome?

Any help is appreciated.