Looking for novel lncRNAs using PhyloCSF · Biostar

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Looking for novel lncRNAs using PhyloCSF

Hey

The majority of lncRNAs aren't properly annotated so I recently generated a GTF file from my RNA-seq dataset using cufflinks. Now I want to go through the GTF and only pull out any sequences which aren't annotated lncRNAs and which have a "lncRNA-like" signatures using PhyloCSF. Does anyone know how to do this?

thanks

alignment rna-seq

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updated 4.9 years ago by Ram

• written 12.2 years ago by g.quaiferyan •

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