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Break the VCF file to 5 populations

Hi all,

My final VCF file contains 5 populations, and I want to break it into 5 populations first to phasing genotypes. So I do not know how to do it. What software and command should I use?

Best Regard

mostafa

snp
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written by mostafarafiepour mostafarafiepour

many thanks for your reply,

Sorry, I did not know exactly which command line I used to break my VCF file into 5 populations??

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written by mostafarafiepour mostafarafiepour

Complete commands (vcf-subset or bcftools) are in the thread that @Pierre linked.

sample.txt is the list of samples per line

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written by GenoMax GenoMax

many thanks for your reply,

Sorry, I did not know exactly which command line I used to break my VCF file into 5 populations??

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written by mostafarafiepour mostafarafiepour

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