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Use vcf file phased for LDhat

Hi all,

I have 28 phased VCF file(For 28 chromosomes), So, I want to use these VCF files to analyze LDhat.

I want to know how to use a VCF file for LDhat? Or, in other words, what changes should be made to the VCF file so that it can be used as an input file for LDhat?

Best Regard

Mostafa

snp

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