Thank you so much sir
• 0 views
•
link
written
by
2012secondseason •
In CIGAR table, what does P operation mean?
Hi everyone. There is a something curious about CIGAR table's list about
P 6 padding (silent deletion from padded reference)
what does P mean and what's diffrence with D operation?
Thank you.
• 3,696 views
•
link
updated
by
Pierre Lindenbaum
•
written
by
2012secondseason •
•
written
by
2012secondseason •
1 answer
It's padding. It's only used for multiple sequence alignment when one wants to add some 'aesthetic' blank characters to get a beautiful visualization.
• 0 views
•
link
written
by
Pierre Lindenbaum
Log in to answer this question.
More posts like this
-
filter reads based on mapped length
written by marco.barr •
-
Split large deletion D in CIGAR string and filtering reads
written by marco.barr •
-
What does ALT[0] mean?
written by Emms •
-
In what cases, does Padded Alignment apply?
written by 2012secondseason •
-
6-bp deletions in RNA-seq data
written by Thomas •
-
In what cases, does Padded Alignment apply?
written by 2012secondseason •
-
In Cigar String, What Is The Difference Between 'N' And 'D' ?
written by Chen Sun
-
Bowtie1 Gapped Alignment
written by Varun Gupta
-
Deciphering Cigar
written by Leszek
-
How To Define Percent-Identity From A Cigar String/ A Bam/Sam File?
written by Michael Dondrup
please validate your previous questions:
If an answer was helpful you should upvote it, if the answer resolved your question you should mark it as accepted.