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How to make this two figures to discuss evolutionary conservation?

please see this two figure. maybe drawing these two figures could require R script. Are there any references or papers talking about how to make these two figures?enter image description here

enter image description here

evolutionary conservation evolution protein domain
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updated by h.mon h.mon • written by vincent.bioscience • vincent.bioscience

Maybe the paper from which these figures come from also mentions how they were generated.

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written by Jean-Karim Heriche Jean-Karim Heriche

1 answer

Probably the ETE Toolkit can do what you want. For example, check these figures:

http://etetoolkit.org/static/img/evol_tree_fb_M2_SLR.png

http://etetoolkit.org/static/img/gallery/tree_and_histogram.preview.png

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written by h.mon h.mon

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