By any chance did you run their latest version of the tool CONIPHER? I am trying to cluster and build trees on my set of samples but unfortunately after their paper came or rather during their revision process they have updated the tool. Now it is giving some weird error at the final clustering stage (Which previously was running fine and generating the tress). Thanks in advance!
• 0 views
•
link
written
by
itigupta24 •
You will have to assume not available anywhere. Like quite a few project groups, the TRACERx team became expert at never actually sharing their data. The work has now gone into a company in London, called Achilles Therapeutics Limited. Not necessarily a bad thing, as the treatments that they are developing are quite promising. If you email them, you will likely not receive a response, but, by posting this comment here, I may be proved incorrect. I write this having published with them myself while I worked with them: https://www.nature.com/articles/s43018-020-0066-y
Thank you very much. I saw some publications claiming that they used these phylogenetic trees so I was hoping that maybe this data is available somewhere in appendices where I couldn't find them!!!
Note: a few years later, Achilles Therapeutics went into liquidation.