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Packages/modules for CNV, Indels, SNPs analysis
1
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17 months ago
Qingyang Xiao • 130
Stockholm

Hello! Can somebody kindly recommand some common and classical packages for targeted sequencing analysis of CNVs, Indels and SNPs?

Thank you again.

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Hi- Are you interested in somatic variants (e.g. tumour vs normal detection) or germline variants (i.e. sample vs reference genome)? Also, when you say "analysis" do you mean going from raw data like fastq or bam files to detection and annotation? Or you have in mind some more specific analysis?

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20 months ago
Hussain Ather • 920
National Institutes of Health, Bethesda…

AnnTools https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3289923/

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16 months ago
geocarvalho • 110
Brazil/Recife

See this repository:

ThousandVariantCallersRepo

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