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map metabolites to KEGG pathway

Hi ALL,

I want to map a number of metabolites to KEGG pathway, however it looks like there is no package made for that purpose. In particular some metabolites are named just with abbreviations. Such as ' 26:0 Lyso PC ', '3:0 Lyso PI'... etc..

Thank you for any input!

metabolite; kegg;
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updated by Kevin Blighe Kevin Blighe • written by mike • mike

1 answer

You should take a look at MetaboAnalyst, which has been updated to improve KEGG mappings: MetaboAnalyst 3.0—making metabolomics more meaningful. It has become quite a popular tool in the realm of metabolomics.

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written by Kevin Blighe Kevin Blighe

wonderful. Thank you.

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written by mike • mike

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