Problem in using trinity at https://galaxy.ncgas-trinity.indiana.edu/
I am using trinity at https://galaxy.ncgas-trinity.indiana.edu/ After uploading the fastq files I just ran trinity but it doesnt work it ends in fatal error.
In usegalaxy.org, I first modify the fastq files through Fastq Groomer before operating trinity which works well. But in https://galaxy.ncgas-trinity.indiana.edu/ there is no such tool. How to fix it? Thanks
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Michael Dondrup
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majeedaasim •
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majeedaasim •
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Contact the admins of the galaxy installation you are using please. There’s nothing else to do for us.
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Hello majeedaasim!
We believe that this post does not fit the main topic of this site.
See Michael's answer. Also, Galaxy questions (if they're generally on Galaxy and not on a particular instance) go on https://biostar.usegalaxy.org/
For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.
If you disagree please tell us why in a reply below, we'll be happy to talk about it.
Cheers!
There is no need to use fastq-groomer if you have data that was recently generated. That tool is only required to convert old solexa/illumina format data to Sanger fastq.