splicegrapher and bam file

Hello, I have installed splicegrapher but do not know which command to use to make splicegraph database. I have BAM file produced from TopHat.

rna-seq splicegrapher

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updated 7.4 years ago by Biostar

• written 8.6 years ago by qudrat

http://splicegrapher.sourceforge.net/userguide.html

... The first step generates a putative transcript database

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written 8.6 years ago by Pierre Lindenbaum

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