Hi,
I am running ABYSS but seem to be running into issues when multithreading -- please see error message below:
ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory make: * [cam4-1.fa] Error 127
Any guidance would be much appreciated!
Thank you.
2 answers
The conda version is very easy to install.
Hi everyone,
Thank you for your help. I re-compiled AbySS using the same version of MPI I was trying to run AbySS with, and it pulled up the correct libmpi.
Resolved!
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try to set the LD_LIBRARY_PATH https://stackoverflow.com/questions/4581305/