How to convert mouse NCBI gene id to gene symbols in R?
I have a data set which was provided with NCBI gene IDs (mouse) and I was wondering how to convert them to gene symbols in R. Here are some top rows from the data:
Gene baseMean baseVar
NM_001042767 74.9953040828301 84923.1811407867
NM_010011 84.3518867026043 131809.51112368
NM_001168229 917.334625543824 325848.209482593
NM_010220 6450.34990285057 10616329.7294415
My question is to convert Gene column to gene symbols.
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This has been asked (and answered) many, many times, here on Biostars and elsewhere. Lets start with some blog posts:
Annotables: R data package for annotating/converting Gene IDs
Convert Ensembl, Unigene, Uniprot and RefSeq IDs to Symbol IDs in R using Bioconductor
Some examples here on Biostars:
Gene Id Conversion Tool
How To Convert List Of Entrez Ids Into Gene Name
convert gene name to entrez id
And on StackOverflow:
Convert GenBank Nucleotide Accession to Gene Symbol
How can I convert Ensembl ID to gene symbol in R?