Single cell Hi-C vs Population based Hi-C

How much percentage of contacts are similar between single cell Hi-C and population Hi-C. And also how much variation or similarity is there between nuclei of cells in terms of chromatin contacts.

genome chip-seq sequencing

• 1,565 views • link

written 8.9 years ago by ankitplusplus 4

0 answers

No answers yet.

More posts like this

single-cell differential expression of unbalanced cell number
written 1.3 years ago by Yingying 6

Hi Biostars community, I have a question regarding the appropriate approach for differential expression testing of scRNA-seq data between two cell groups with unbalanced cell …
Cell-Cycle Variation in 10x Multiomics
written 2.2 years ago by georgii.vdovin 0

Hello, I have 10x ATAC+RNA single nuclei data from 10x, for T cells. There is a distinct cluster of proliferating T cells, and for cell …
Tutorial: How to Label the Y Axis with percentage sign and Order Bars in ggplot2 using a single cel…
written 2.7 years ago by Ming Tommy Tang 469

Hi all, I made this tutorial on how to plot the percentage of cells in a single cell data in ggplot2 and label the y-axis …
Does 10X cv3 single-nuclei RNA-seq suitable for premRNA quantification to identify cell clusters a…
written 5.9 years ago by Mina 0

Hi, I\`m a newbie in single-cell region. There is a set of 10X cv3 single nuclei data, I ran cell ranger and got both mRNA …
issues with single nuclei sequencing
written 6.4 years ago by Rahul Tyagi 1

Hi All, I am working on a set of single-nuclei sequencing samples. Does someone know why I might be getting a bimodal distribution in one …
single cell RNA-seq
written 6.8 years ago by nancy 9

In scRNA-seq -how does one tell the difference between cells which are in a different temporal phase than other cells hence have a different gene-expression …
Mitochondrial genes in single cell nuclear RNAseq data
written 7.7 years ago by dalhoomist 6

I have done several single cell nuclear RNAseq experiments on human brain tissue. I followed this protocol outlined in Krishnaswami et al [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4941947/][1]. The percentage …
TF binding region in chromatin contacts
written 9.2 years ago by ankitplusplus 4

Hi, I was reading some articles where CTCF binding sites co-occur with cohesin (RAD21) binding site with 60-80% in any particular cell. I wanted to …
Single-cell RNA-seq normalization with ERCC for isoform analysis
written 9.8 years ago by garyhokawai 3

Hi everyone, Does anyone have any recommendation on the single-cell rna-seq data normalization methods? I would like to do normalization across a mix population of …
Percentage of similarity between two contigs files
written 10.6 years ago by ' 34

<p>Is there a way to show how much similarity/difference there is between two contigs.fasta files resulting from two different assemblers? I have already used QUAST, …