Tools to generate coverage plots for the sequenced virus reads
Hi Folks,
I have sequenced virus reads (151 bases, paired-end) samples using MiSeq. I would like to generate coverage plots. Do you recommend any tools to generate it and visualize them?
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Brian Bushnell
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bioinforesearchquestions
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IGV is great for that purpose. It requires a mapped, sorted, indexed bam file as input as well as the reference fasta.
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