More posts like this
-
News: Course - Introduction to R Shiny
written by Physalia-courses
-
Create a genomic portal web app
written by Patriche •
-
Download dataset using URL from Shiny App
written by sanjukta •
-
Hosting scRNA-seq data for query
written by LacquerHed •
-
R data repository to use in shiny app
written by gracie •
-
Job: R Shiny Developer
written by bemisia11 •
-
PCA on RNAseq time series data
written by jennifer.m.conrad.gr •
-
IGV with subset of bam file
written by grant.hovhannisyan
-
Which software for writting own app?
written by agata88
-
Displaying gene annotation data in biodilliance
written by Bioaln
why storing a bam in a database when you can have a direct access to the files on your server ?
I want to make a shiny app to visualize a unique type of RNAseq results. Some characters of this RNAseq data cannot be visualized with IGV. I do it with R on my Mac (wouldn't have a server for few months), but it would be a lot easier for my collaborators if it is in a shiny app.
it doesn't answer my question: why would you store a BAM in a mongdb when you can store the BAM files on your server ? Storing the path on mongo is OK, storing the reads looks weird to me. see also: In-place writable BAM files
How could I store the BAM on my server if I do not have one? As I said I would not have server access for few months :-( Even I have a server, I think MongoDB is more stable and it is free in some cases. Thanks for the link. I will think about it :-)
i don't understand; if you have a mongdb server, then you have a server.... (?)
If I have a mlab account, can I consider that my server?
ah, I understand now. You're not the owner of the server and your'e just using mongodb as a service.