Hello, Can someone help me regarding the results of analyze_diff_expr.pl script? What are ConditionA-UP.subset and ConditionB-UP.subset? In one list, I have got positive logFC value …

Hi everyone. Has anyone here used the [metaSeq package][1] to carry out a meta-analysis of raw counts data from RNA-seq runs from different studies? I …

Hello All, I would like to know what the experts feel about defining single-cell clusters using up-regulated versus down-regulated marker genes. There is this general …

hello everyone, my question is I have a mutant and wild gene analysis in excel. I did t-test and fold change, I have up-regulated bigger …

hello everyone, after meta-analysis I want to investigate genes in each experiment,for example I want to know "gene1" that is up-regulated gene in meta-analysis, is …

Hello all, I have some RNA-SEQ data and do some analysis by metaseq package for meta-analysis,for choosing genes I calculate q-value and local FDR,but after …

i performed Rankprod for Differential gene expression analysis b/w normal and test samples of zebrafish, and i got up regulated and down regulated genes. but …

Dear All I ran cuff-links/cuff-diff pipeline on my RNA-seq data. But I have some problem on how to interpret the up and down regulated genes …

Hello experts can share your knowledge While analyzing the deferentially expressed genes some paper they have analyzed up or down regulated genes separately. Is it …

<p>Hello</p> <p>How can I determine genes regulated by a protein?</p> <p>I tried to find intersection of peaks(MACS) and genes coordinates but as a result I …