Can I get BLAST results from commandline BLAST+ in complete and aligned FASTA format?
I use Biopython to run BLAST and work with the results so if it's possible with that it'd be useful.
• 1,743 views
•
link
written
by
rmartson •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
BioPython ESearch XML File & Dates
written by chrisgbeldam •
-
How to write code to extract e.g. 1kb upstream of desired sequence to obtain promoter sequences for…
written by Monika515 •
-
s. start and s.end in tabular BLAST output are the wrong way around?
written by rmartson •
-
Code for retrieving hit count from tabular BLAST format (outfmt=7 on Biopython) not working
written by rmartson •
-
Trying to check if a query id appears in tabular blast output but not getting any positives even fo…
written by rmartson •
-
Is it possible to download BLAT results as actual sequences i.e. in genbank or fasta format?
written by rmartson •
-
How to group BLAST results by ID and then check the difference in an attribute like sequence length…
written by rmartson •
-
Extracting 100bp flanking sites around aligned sequences from BLAST results using Biopython or Biop…
written by rmartson •
-
How To Sort A Ncbiwww.Qblast Output By Score?
written by david •
-
What'S Faster? "Blastall -P Blastp" Or "Blastp?"
written by Lee Katz
What sequences are you blasting? Sounds more like you want a multi-sequence alignment.
One viral LTR sequence against the entire human genome and then multiple of those results against the chimpanzee genome to find homologs.