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rmartson
rmartson
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Last seen:
9.1 years ago
Latest posts by user
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Comment: C: Show Progress (Bar?) For Blast+ Query
written by rmartson • rmartson
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1 reply
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Comment: C: Which database should I be downloading to setup local BLAST and BLAT to find hit
written by rmartson • rmartson
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2 replies
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Comment: C: Is there a more efficient way of checking multiple sequences for how many hits t
written by rmartson • rmartson
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Comment: C: Is there a more efficient way of checking multiple sequences for how many hits t
written by rmartson • rmartson
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Comment: C: Is there a more efficient way of checking multiple sequences for how many hits t
written by rmartson • rmartson
1 vote
10 replies
3.9K views
Database for local BLAST and BLAT for 200-1000bp query sequences in human and primates
blast blat
updated by WouterDeCoster WouterDeCoster • written by rmartson • rmartson
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Comment: C: How to efficiently find any instances of two hits (LTRs) in close proximity to o
written by rmartson • rmartson
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2 replies
2.0K views
How to efficiently find any instances of two hits (LTRs) in close proximity to one another in the genome? (Finding full-length proviruses)
biopython blast
written by rmartson • rmartson
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Comment: C: Is there a more efficient way of checking multiple sequences for how many hits t
written by rmartson • rmartson
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9 replies
4.6K views
Is there a more efficient way of checking multiple sequences for how many hits they have in the human genome?
biopython blast
updated by Alex Reynolds Alex Reynolds • written by rmartson • rmartson
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Comment: C: Is it possible to download BLAT results as actual sequences i.e. in genbank or f
written by rmartson • rmartson
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1 reply
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Comment: C: Is it possible to download BLAT results as actual sequences i.e. in genbank or f
written by rmartson • rmartson
0 votes
0 replies
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Comment: C: Is it possible to download BLAT results as actual sequences i.e. in genbank or f
written by rmartson • rmartson
1 vote
0 replies
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Comment: C: SeqIO.parse reading a 200bp FASTA sequence as 132bp
written by rmartson • rmartson
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6 replies
2.8K views
Is it possible to download BLAT results as actual sequences i.e. in genbank or fasta format?
blat ucsc
written by rmartson • rmartson
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1 reply
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Comment: C: SeqIO.parse reading a 200bp FASTA sequence as 132bp
written by rmartson • rmartson
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1 reply
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Comment: C: SeqIO.parse reading a 200bp FASTA sequence as 132bp
written by rmartson • rmartson
0 votes
6 replies
2.8K views
SeqIO.parse reading a 200bp FASTA sequence as 132bp
biopython
updated by Peter Peter • written by rmartson • rmartson
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1 reply
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Comment: C: Where do you actually download UCSC BLAT output?
written by rmartson • rmartson
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3 replies
2.0K views
Where do you actually download UCSC BLAT output?
blat ucsc blast
written by rmartson • rmartson
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