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rmartson
rmartson
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Latest posts by user
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Comment: C: s. start and s.end in tabular BLAST output are the wrong way around?
written by rmartson • rmartson
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4 replies
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s. start and s.end in tabular BLAST output are the wrong way around?
blast biopython
updated by biomonte biomonte • written by rmartson • rmartson
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Comment: C: Are the UCSC genome assemblies non-redundant? How do I get a non-redundant genom
written by rmartson • rmartson
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2 replies
1.9K views
Are the UCSC genome assemblies non-redundant? How do I get a non-redundant genome fasta?
genome ucsc blast
written by rmartson • rmartson
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1 reply
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Comment: C: NCBI BLAST+ via Biopython fails if I use a long name for the outfile?
written by rmartson • rmartson
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1 reply
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Comment: C: NCBI BLAST+ via Biopython fails if I use a long name for the outfile?
written by rmartson • rmartson
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1 reply
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Comment: C: NCBI BLAST+ via Biopython fails if I use a long name for the outfile?
written by rmartson • rmartson
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1 reply
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Comment: C: NCBI BLAST+ via Biopython fails if I use a long name for the outfile?
written by rmartson • rmartson
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8 replies
3.0K views
NCBI BLAST+ via Biopython fails if I use a long name for the outfile?
biopython blast
written by rmartson • rmartson
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Comment: C: Need to extract sequences from genome fasta (SeqIO object) into output file usin
written by rmartson • rmartson
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2 replies
2.8K views
Need to extract sequences from genome fasta (SeqIO object) into output file using for loop. How do I return to the start of the genome with every iteration?
biopython blast
updated by James Ashmore James Ashmore • written by rmartson • rmartson
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Comment: C: Can I get BLAST results from commandline BLAST+ in complete and aligned FASTA fo
written by rmartson • rmartson
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2 replies
1.7K views
Can I get BLAST results from commandline BLAST+ in complete and aligned FASTA format?
biopython blast
written by rmartson • rmartson
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Comment: C: Why am I getting at least 2 BLAST hits for an abnormally large number of query s
written by rmartson • rmartson
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2 replies
178 views
Why am I getting at least 2 BLAST hits for an abnormally large number of query sequences I spliced together (7307/7326)?
biopython blast
written by rmartson • rmartson
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Answer: A: (Resolved) Code for retrieving hit count from tabular BLAST format (outfmt=7 on
written by rmartson • rmartson
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Comment: C: (Resolved) Code for retrieving hit count from tabular BLAST format (outfmt=7 on
written by rmartson • rmartson
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1 reply
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Comment: C: (Resolved) Code for retrieving hit count from tabular BLAST format (outfmt=7 on
written by rmartson • rmartson
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5 replies
2.9K views
Code for retrieving hit count from tabular BLAST format (outfmt=7 on Biopython) not working
biopython blast
written by rmartson • rmartson
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Comment: C: Trying to check if a query id appears in tabular blast output but not getting an
written by rmartson • rmartson
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