I'm looking for either a database (like SRA) or even a study that provides its data that has labels associated with the data. Ideally, this would be metagenomic data (either sequences or abundance tables) in a study that has a strong link between a feature like a species and the condition being studied.
Just reaching out because I haven't been able to find any studies that have enough data for my application (implementing machine learning algorithms) - so ideally we are talking about at least 100 samples for the condition being studied (controls, maybe the same).
Any help is appreciated. Thanks guys
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edward.messick •
Hi Edward,
You can check below mentioned post. It may solve your purpose http://github.com/gjospin/PhyloSift/issues/59.
thanks! I'll look through that post... of course I'm probably being a little too nitpicky with my search... we'll never really find ideal data in the real world, will we?
The closest databases I can think of are
The American Gut project has the quantity of data, so that might be the most interest to you for machine learning purposes. Good luck.
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