How to download a large amount of NGS metadata for studies?
Hi All,
I am starting my project with RNA-Seq in human. I've worked with SRA data for other species, but the present work is much bigger.
I do not know if there is a site that provides the information I want. I want to get two tables (txt or CSV) of experiments (with information to download the files later):
1- paired-end reads, > 75 BP and a specific cellular tissue;
2- paired-end reads, > 75 BP, a specific cellular tissue and only data from normal condition;
Thanks!
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1 answer
This is really an issue of whether the data is annotated properly, if it is you can do a:
esearch -db sra -query "your query goes here" | efetch -format runinfo
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