This is a test version of Biostars. For the public version, visit https://www.biostars.org.
How to install ShotgunFunctionalizeR

Hi everyone,

Is there anyone know how to install ShotgunFunctionalizeR? I installed the previous version of R programming but was not able to get bioconductor as R does not recognize both https and http for URL. Then I tried to install ShotgunFunctionalizeR manually by getting all dependencies and I stuck in getting package 'parallel' because it is not available in older version of R. Anyone know how to solve this?

Thanks in advance!

r rna-seq
• 2,490 views • link
updated by Biostar Biostar • written by zhangzhenyusz • zhangzhenyusz

I installed the previous version of R programming but was not able to get bioconductor as R does not recognize both https and http for URL

What is your version of R and what is the exact error message when you do 

source("http://bioconductor.org/biocLite.R")
biocLite()
• 0 views • link
written by Santosh Anand Santosh Anand

My version is 2.12 now. Not able to install bioconductor which shotgunfunctionalizer leans on.

source("http://bioconductor.org/biocLite.R") A new version of Bioconductor is available after installing the most recent version of R; see http://bioconductor.org/install Warning in value[3L] : https: failed (cannot open the connection), trying http BioC_mirror = http://bioconductor.org Change using chooseBioCmirror(). Warning message: In file(file, "r", encoding = encoding) : unsupported URL scheme

• 0 views • link
written by zhangzhenyusz • zhangzhenyusz

Try with http:// protocol instead of https:// ?

• 0 views • link
written by Santosh Anand Santosh Anand

I actually used "http://". That's why I so confused.

• 0 views • link
written by zhangzhenyusz • zhangzhenyusz

0 answers

No answers yet.

Log in to answer this question.

More posts like this