Plotting short reads on gene CDS without splice junctions
Hello,
I work with ribosome profiling data and I'm trying to plot the start of my reads on an axis representing only the CDS (or exons) of a genome region, without having the gaps of the splice junctions. I managed to get a nice representation in Gviz like here but I'm trying to get rid of the splice junction and have only the coverage and/or start position over the exons.
Touching the genome axis in Gviz seems a bit tricky, and I did not find any package to or any simple methods to do this. Has anyone already been into this and found a solution ?
Thank you
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