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stefanos.bamopoulos
stefanos.bamopoulos
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Joined:
9.3 years ago
Last seen:
8.1 years ago
Latest posts by user
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1.7K views
Combining lenient prefiltering with expression filtering of the results in a DE experiment
differential expression limma rna-seq filtering
updated by Biostar Biostar • written by stefanos.bamopoulos • stefanos.bamopoulos
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0 replies
1 view
Comment: C: Building a biologically meaningful design matrix for limma/voom in a large RNASe
written by stefanos.bamopoulos • stefanos.bamopoulos
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0 replies
1 view
Answer: A: How can I produce gene level quantification using Salmon pseudo-aligner?
written by stefanos.bamopoulos • stefanos.bamopoulos
0 votes
4 replies
4.3K views
Building a biologically meaningful design matrix for limma/voom in a large RNASeq experiment
limma voom rna-seq confounding
updated by Gordon Smyth Gordon Smyth • written by stefanos.bamopoulos • stefanos.bamopoulos
0 votes
2 replies
7.1K views
STAR using splice junctions from SJ.out to find flanking exons (GRCh37)
star gtf grch37 sj.out rna-seq
updated by MirkoR • MirkoR • written by stefanos.bamopoulos • stefanos.bamopoulos
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Comment: C: Differential Expression of Splice Junctions using voom-limma/voom-diffSplice
written by stefanos.bamopoulos • stefanos.bamopoulos
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0 replies
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Comment: C: Using Ensembl ID History Converter on GRCh37 Transcripts for salmon
written by stefanos.bamopoulos • stefanos.bamopoulos
0 votes
1 reply
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Comment: C: Differential Expression of Splice Junctions using voom-limma/voom-diffSplice
written by stefanos.bamopoulos • stefanos.bamopoulos
2 votes
4 replies
4.5K views
Differential Expression of Splice Junctions using voom-limma/voom-diffSplice
rna-seq de limma splice junctions
updated by Biostar Biostar • written by stefanos.bamopoulos • stefanos.bamopoulos
0 votes
1 reply
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Comment: C: How to splice introne sequences for each transcript.
written by stefanos.bamopoulos • stefanos.bamopoulos
2 votes
0 replies
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Answer: A: Help for finding the right FASTA file for kallisto
written by stefanos.bamopoulos • stefanos.bamopoulos
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0 replies
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Comment: C: Using Ensembl ID History Converter on GRCh37 Transcripts for salmon
written by stefanos.bamopoulos • stefanos.bamopoulos
0 votes
4 replies
4.0K views
Using Ensembl ID History Converter on GRCh37 Transcripts for salmon
rna-seq salmon grch37 ensembl
updated by Magali_Ensembl Magali_Ensembl • written by stefanos.bamopoulos • stefanos.bamopoulos
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3.9K views
Reference Transcriptome for hg19
rna-seq salmon transcriptome reference hg19
written by stefanos.bamopoulos • stefanos.bamopoulos
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