counting the number of reads supporting a particular SNP in a VCF file
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A: Finding The Number Of Reads Which Support A Variant In Vcf
or from the vcf file you could search for AD filed
Good catch, I'll close this thread. Question looks sufficiently similar.
Hello Arsalan!
Questions similar to yours can already be found at:
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Cheers!
Thanks for your proper response. I am happy if it gets closed !