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Best splicing variant

Dear friends,

I need to get the best splicing variant of all soybean transcripts. How can I do that? Can I say that the longest is the "best splicing variant"?

Thanks

rna-seq
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updated by jnoble333 • jnoble333 • written by valopes • valopes

Can I say that the longest is the "best splicing variant"?

No, why would that be the best one?
Another method would be to select the most abundantly expressed...

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written by WouterDeCoster WouterDeCoster

Sure. This makes more sense. Thank you.

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written by valopes • valopes

1 answer

What do you mean by best? Would it be the most highly expressed variant? It really comes down to what question you are trying to answer with your data set.

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written by jnoble333 • jnoble333

Yep, I don't even think the question makes any sense. "best splicing variant"? That has no meaning.

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written by Brian Bushnell Brian Bushnell

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