I have GBS, resequencing, and ChiSep data, is it possible/right to combine it to performe a GWA?
Hi all,
I was wondering if I could use GBS data of some genotypes and ChiSeq of other genotypes or resequencing data to do the SNP calling and so GWA for all?
If so, how can I do that? Which parameters should I be careful using to try to sort of normalize all this data?
I know it may be a wide question, but I need to start from something.
Thanks in advance.
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Combining single and paired end reads for SNP calling?
written by bio-jr •
-
Can I combine the GBS data with Whole Genome Resequencing for GWAS analysis
written by gengyang12138 •
-
How can I generate a .vcf faster with GATK - HaplotypleCaller?
written by valopes •
-
using glm for GWA study
written by f.hadizadeh •
-
Best Way To Normalize Rna-Seq Data
written by Edalat •
-
1000 Genome genotypes for list of snps
written by Alexander Skates
-
genome version conversion
written by Myosotis1979 •
-
What Types Of Analyses Are Typically Done After Snp Genotyping?
written by David_emir
-
Software / Pipeline For Affymetrix Genome-Wide Human Snp Array 6.0
written by pmoney1 •
-
How To Build The Index Between Genome And Mrnas?
written by Haiping •
