More posts like this
-
Few lymphocytes detected by cell type deconvolution tools in lung adenocarcinoma
written by 350769816 •Lung adenocarcinoma(LUAD) is a kind of solid tumor which is usually thought to originate from AT2 cells in aveolar epithelium. Recently I tried BayesPrism, SCDC …
-
Which one do you recommend for the problem with the smaller number of normal samples of TCGA?
written by Zahra •Hi all, I've analyzed the HTSeq count data of TCGA and have used the DESeq2 for normalization. As you know there are a small number …
-
Tumor-infiltrating immune cells
written by J.farideh76 •Hi, I have a list of genes and samples which got from TCGA in STAR count format and normalize them with edgeR and limma packages, …
-
how to correct gene expression based on tumor purity
written by liu4greHi all, I am looking at TCGA gene expression data. Also I am interested in tumor purity, which may be inferred by a few tools …
-
How to download TCGA histopathology data for all TCGA samples
written by sunilpachakar •Dear All, I want to download TCGA histopathology data for all samples in TCGA, I already tried cBioportal dataset downloading option but it gave me …
-
Get relative gene expression levels of a gene (for example, TP53) across all (or most) TCGA cancer …
written by wcc957 •I am interested in looking for relative gene expression level of a gene (such as TP53) across all cancer samples to get some senses of …
-
TCGA SNP data
written by liu4gre<p>Hi, guys,</p> <p>I am trying to use TCGA SNP Level 2 data. However, I found the available files including more samples provided in data matrix. …
-
Help With Snp Array
written by liu4gre<p>Dear all,</p> <p>First time to touch SNP array. I have a set of SNP array downloaded from TCGA. Now I am interested in the SNP …
-
Question About Tcga Snp-Array Data
written by liu4gre<p>I am trying to use TCGA SNP data, the it is level-2. There are 4 types of data for each samples: genotype.dat, intensities.dat, alleleSpecificCN.dat, pairedcn.dat. …
-
Is There A Way To Know When A Particular Tcga Sample Was Analyzed And Added To The Database?
written by Jordan<p>Hi,</p> <p>I have few TCGA samples in the format TCGA-XX-XXXX, and I would like to know when these samples were analyzed? Is there a way …