automated SRA annotaion/Accession List · Biostar

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automated SRA annotaion/Accession List

Hello I am studying RNA-seq from SRPs and want to create an automated analyzing-pipeline. I need the annotation per SRR thats for example in the RunInfo Table of the NCBI Trace selector. (e.g. https://trace.ncbi.nlm.nih.gov/Traces/study/?acc=DRP000617 ). It seems to me there is no way of creating a link to that Table as I only have the corresponding SRP and SRR. Does anybody know an automated way to get the annotations?

rna-seq sra ncbi run selector

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updated 8.9 years ago by hh.earlydays •

• written 9.3 years ago by cakesebastian •

1 answer

Please see this discussion: How To Get All Runs For A Sample In Sra? In your case, you can use http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?save=efetch&db=sra&rettype=runinfo&term=DRP000617

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written 8.9 years ago by hh.earlydays •

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