Download SraRunTable via entrez-direct
Hey everyone,
I always downloaded the SraRunTable via the command line using this command:
esearch -db sra -query {SRP number} | efetch -format runinfo
However, this does not have the same contents as the SraRunTable.txt that I can download from the SRA Run Selection. Is there a way to download this exact format via the command-line?
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GenoMax
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gernophil •
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I don't think so unless you want to parse the XML yourself after retrieving the data in that format.
You can alternatively download the data from the Run Browser though.