I am trying to download the RunInfo Table for a number of entries in the BioProject or SRA databases. I have installed Entrez Direct and have esearch and efetch working, but they don't provide the same information as downloading the RunInfo Table manually.

When I run this code:

esearch -db sra -q 'PRJNA417256' | efetch -format runinfo > PRJNA417256.sra.csv

I get a .csv with the following fields:

• Run
• ReleaseDate
• LoadDate
• spots
• bases
• spots_with_mates
• avgLength
• size_MB
• AssemblyName
• download_path
• Experiment
• LibraryName
• LibraryStrategy
• LibrarySelection
• LibrarySource
• LibraryLayout
• InsertSize
• InsertDev
• Platform
• Model
• SRAStudy
• BioProject
• Study_Pubmed_id
• ProjectID
• Sample
• BioSample
• SampleType
• TaxID
• ScientificName
• SampleName
• g1k_pop_code
• source
• g1k_analysis_group
• Subject_ID
• Sex
• Disease
• Tumor
• Affection_Status
• Analyte_Type
• Histological_Type
• Body_Site
• CenterName
• Submission
• dbgap_study_accession
• Consent
• RunHash
• ReadHash

When I manually download the RunInfo Table I get a .csv with the following fields:

• Run
• Antibody
• Assay Type
• AvgSpotLen
• BioProject
• BioSample
• cell_line
• Center Name
• Consent
• DATASTORE filetype
• DATASTORE provider
• DATASTORE region
• Experiment
• GEO_Accession
• Instrument
• LibraryLayout
• LibrarySelection
• LibrarySource
• MBases
• MBytes
• Organism
• Platform
• ReleaseDate
• sample_acc
• Sample Name
• source_name
• SRA Study
• transfection
• treatment

Is there a way to get the contents of the RunInfo Table from the command line (particularly: Antibody, Assay Type, cell_line, Organism, source_name, transfection, treatment)?

Thanks.