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SNP2HLA - Possible to conduct with low memory?

Hello,

I am doing HLA imputation, using SNP2HLA. I am initially creating reference panel by the "MakeReference.csh". There are 12 steps in order to complete the process of making reference, but I cannot complete the step "11" as the memory is not enough. I actually use CentOS7, VM workstation 12.5 pro. I increased the memory to 32GB, but still I cannot complete.

Does anybody know how much memory is required in order to complete the process making the reference?

Thanks in advance!

snp genome snp gene
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written by khn khn

Your title (is something possible on CentOS?) has no relation with your problem (is something possible with low memory).

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written by h.mon h.mon

1 answer

I figured out- we need to make bed bim fam files only for chr6.. then we could conduct with low memry.

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written by khn khn

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