How identify zero fold degradation sites
Hi all As I want to identify all the zero fold degradation sites in my genome, I have got annotation file (gff3) and genome sequence, could you please tell me how to identify the sites that are zero fold degradation sites. As I am a new man to Python or Perl, I can not write a script to do that, Could you please help me?
Thanks
• 2,543 views
•
link
updated
by
Sergey Naumenko
•
written
by
yixinrufeng •
•
written
by
yixinrufeng •
1 answer
"Zero fold degenerate site" looks like an incorrect term. The correct ones are 'fourfold degenerate' and 'twofold degenerate': Genetic code. The corresponding question has been already answered for example, here
• 0 views
•
link
written
by
Sergey Naumenko
Log in to answer this question.
More posts like this
-
script for local blast to mapped primer to the genome
written by skdv2522 •
-
Impact of transposable elements on genome organisation/ shaping genome
written by lukhanyomakhabane •
-
Gff3 - moving an annotation from scaffold level to pseudomolecule level
written by Philipp Bayer
-
How to concatenate more than 1000 loci?
written by yixinrufeng •
-
How to get HGVS notation of protein form genome snp vcf
written by yixinrufeng •
-
How identify zero fold degenerate sites
written by yixinrufeng •
-
Errors about exonerate gff2 file to EVM gff3 converting
written by Ginsea Chen
-
Extracting four fold degenerate sites from nucleotide alignment
written by A •
-
extracting the exon sequence of genomic region
written by firoz.imtech •
-
Perl Or Python Script To Calculate Phi,Psi Angle Of A Pdb File
written by Siddharth •
what is a "zero fold degradation" site ?
oh, it is zero fold degenerate sites
Can you give us an example of what you mean and what you are trying to achieve