Question

Differential Expression of illumina microarray data

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7.1 years ago

bio94 ▴ 60

How to perform differential expression this Illumina Microarray GEO Dataset-GSE48624??? I'm want to perform differential expression analysis and get the list of up-regulated and down-regulated genes! Thank you

differential expression illumina microarray music • 3.2k views

ADD COMMENT • link updated 5.9 years ago by Biostar 20 • written 7.1 years ago by bio94 ▴ 60

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The Limma User Guide is an excellent read.

ADD REPLY • link 7.1 years ago by h.mon 35k

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Another good starting point is the bioconductor workflow for microarray.

ADD REPLY • link 7.1 years ago by WouterDeCoster 47k

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lumi?

ADD REPLY • link 5.9 years ago by cpad0112 21k

score 1 · Answer 1 · 2017-11-24

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6.4 years ago

said3427 ▴ 120

You can use GEO2R and get the results in a minute.

https://www.ncbi.nlm.nih.gov/geo/geo2r/?acc=GSE48624

ADD COMMENT • link 6.4 years ago by said3427 ▴ 120