This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Picard Build Failure

I downloaded the latest Picard release from https://broadinstitute.github.io/picard/ after I run ./gradlew shadowjar the build fails with the following message -

macbook:picard-2.9.0 User1$ ./gradlew shadowjar

FAILURE: Build failed with an exception.

  • Where: Build file '/Users/User1/Documents/picard-2.9.0/build.gradle' line: 20

  • What went wrong: An exception occurred applying plugin request [id: 'org.ajoberstar.grgit', version: '1.4.2']

    Failed to apply plugin [id 'org.ajoberstar.grgit'] One of setGitDir or setWorkTree must be called.

  • Try: Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output.

BUILD FAILED

Any ideas how I could fix it?

Any help is highly appreciated! Thanks!

picard
• 3,543 views • link
written by NGS-Newbie • NGS-Newbie

You know you can download a compiled jar here?

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written by h.mon h.mon

Thanks, Pierre! Sorry, I will remove it from here.

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written by NGS-Newbie • NGS-Newbie

1 answer

BUILD SUCCESSFUL!

Solution here! https://github.com/broadinstitute/picard/issues/777

Thank so much, Ibergelson!!

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written by NGS-Newbie • NGS-Newbie

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