How to get the normalized counts matrix EDASeq ?
Hi Biostars,
how to get the normalized counts matrix after normalizing using the withinLaneNormalization() function of EDASeq package. When I normalize for GC content bias using:
dataWithin <- withinLaneNormalization(data, "gc", which="full")
then I see in the resulted dataframe 3 elements: counts, normalizedCounts, and offset.
Is assayData[dataWithin]$normalizedCounts, the normalized counts matrix ?
your response will be appreciated
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