How to get the normalized counts matrix
Hi Biostars community,
I'm trying to retrieve the normalized count matrix after normalizing with UQ using the betweenLaneNormalization() method, but I don't obtain the matrix like for example if you want to get the normalized matrix from edgeR just counts(obj,normalized=T).
any idea ?
1 answer
Presumably you are using EDASeq. try normCounts()
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GouthamAtla
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