How can I get the normalized counts matrix after doing TMM normalization using edgeR
Hi biostars community,
How can I get the normalized counts matrix after doing TMM normalization using edgeR ? I saw a response in an older post that we can get this matrix by using cpm() function of edgeR package, but I think the CPM normalization method is different from the TMM method. is that right ?
thanks all
1 answer
See this discussion: https://support.bioconductor.org/p/77193
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