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How to get complete database of matabolic network of Plasmodium falciparum

Hello,

Where can I download complete database of metabolic pathways of Plasmodium falciparum. I have search through KEGG, PlasmoDB, PlasmoCyc, MPMP databases but no headway? Kindly assist me with a link.

Thank you

genome next-gen sequencing gene
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updated by Khader Shameer Khader Shameer • written by phemmysmart • phemmysmart

Database? Do you mean pathways and corresponding genes ?

If so,

T00095  pfa Plasmodium falciparum 3D7   Eukaryotes;Protists;Alveolates;Apicomplexans
T01051  pfd Plasmodium falciparum Dd2   Eukaryotes;Protists;Alveolates;Apicomplexans
T01052  pfh Plasmodium falciparum HB3   Eukaryotes;Protists;Alveolates;Apicomplexans

Kegg has three different strains (as above). Use GeneSCF to retrieve all pathways and corresponding genes using appropriate codes (pfa or pfd or pfh).

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written by EagleEye EagleEye

Thank you for your response. I am working on identifying metabolic pathways of Plasmodium falciparum hence I specifically need a database containing all the reactions of the organism which i can analyse to obtain potential metabolic pathways. @Michael Dondrup, Reactome only provides pathway but what i need is a complete metabolic reaction database of Plasmodium falciparum. Kindly assist with a link to download the database

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written by phemmysmart • phemmysmart

Please be more specific. In your question you asked for metabolic pathways, reactome provides that, metabolic reactions is essentially the same thing. To download their database, please check out the Downloads section of Reactome.

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written by Michael Dondrup Michael Dondrup

1 answer

KBase have metabolic models of p. falciparum

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written by Khader Shameer Khader Shameer

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