I would like to compare the difference between the 2 type of lung cancer , adenocarcinoma and squamous cell carcinoma in team of Long non coding RNA (LncRNA) , however, i have no idea where i can freely access the expression profile for adenocarcinoma (tumor sample).
2 answers
I assume you are looking for TCGA expression data. You can access expression of all classes of RNAs in Synapse TCGA project. You have to simple login to access more datasets (cancers or TCGA live section).
Lung cancers: LUAD and LUSC
sorry I downloaded TCGA_miRNAseq.tar.gz from http://rna.sysu.edu.cn/onconcrna/download.php containing many txt files such as ACC.txt, BLCA.txt, etc. how I know in each file which is control and which cancer sample???
thank you in advance
sorry I downloaded bcgsc.ca_LUSC_IlluminaHiSeq_miRNASeq from Synapse TCGA project for LAUD but in columns there are sample names TCGA-77-7463-01A-11H-2044-13 TCGA-43-6773-11A-01H-2124-13 TCGA-90-7767-11A-01H-2124-13 TCGA-90-7964-01A-21H-2186-13 TCGA-58-8386-01A-11H-2295-13, etc
how I know which one is for cancer aand which is control samples?
You can downloaded all expression values of lncRNAs and protein-coding genes generated by TCGA RNA-seq datasets from oncoNcRNA download page.
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What do you mean with expression profile? Are you looking for RNA-seq raw datasets? Try to be as informative and precise as possible when asking questions.